Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019587
Fusion event
HBV-EVPLL integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
Start
End
18289645/18386331 (Hg38)
Location type
Intron9
Target gene
Nearest miRNA
hsa-mir-1253/Upstream/45445; hsa-mir-10226/Downstream/958175;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/2848, chr17-CpG: 35/Downstream/25374
Upstream sequence
TTCATCTTAAAGTCCTAGCACTGATCAAACCACTTAAGCTCTCTGGTCCACAGCCTCTTCCCACTTATAAGGGAGAAGCCAGCCTCACTCCTGTCTAAGG
Downstream sequence
gacgctgtctccaaataagatcacattctcaggcactggggctaaggacatcaacataggaatttcaggggacaaattcaacccaccacaTAGGCCCTCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.