EVPL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019589
Fusion event
HBV-EVPL integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74017299/76021218 (Hg38)
End
74017394/76021313 (Hg38)
Location type
Intron13
Target gene
EVPL
Nearest miRNA
hsa-mir-10226/Upstream/236611; hsa-mir-1250/Downstream/76706;
Nearest TSS
ENST00000595228/Upstream/8927; ENST00000329003/Downstream/5918;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/6044, chr17-CpG: 78/Downstream/257
Upstream sequence
aaataatgaaccaggacaaggagcttattatgaaaagcaagactgctgctgccctgctgccctaccccttcccatttcttgtccctcttctcaaaggtaa
Downstream sequence
ccaaagtgctgggattacaggtgtgagccaccgcgccctgccAGCTCTGTCTAGTTGGGAGGTGCAGTGCCTCTCCTGTGGGCAGGGGTGCTGTGCTCcc
Target sequence
ctaattttggtatttttagtagagacagggtttcaccatgttggccaggctgatctcgaactcctgacctcaagtgatccaccagcctcggcctc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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