MYOM1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019590
Fusion event
HBV-MYOM1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
3108768/3108770 (Hg38)
End
3108768/3108770 (Hg38)
Location type
Intron16
Target gene
MYOM1
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-mir-8078/Upstream/2996431; hsa-mir-1-2/Downstream/776583;
Nearest TSS
ENST00000575820/Upstream/18004; ENST00000580139/Downstream/20811;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/41235, chr18-CpG: 79/Downstream/138525
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
ccttgtgatccgcctgtcttggcctcccaaagtgctgggataataggcgtgaggcaccgtgtccggccAATGACAGCATTTCAGAATTTCTAACATGCCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate