Basic Information
VIS ID
TVIS10019595
Fusion event
HBV-LINC01317 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1420
Integrated sequence
ACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTC| |CTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
34323968/34098901 (Hg38)
End
34323968/34098901 (Hg38)
Location type
Intron4
Target gene
LINC01317
Nearest miRNA
hsa-mir-1301/Upstream/680337; hsa-mir-10b/Downstream/1372504;
Nearest TSS
ENST00000437798/Upstream/31675; ENST00000422558/Downstream/284887;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/371284, chr2-CpG: 191/Downstream/2256353
Upstream sequence
gcagagttctgccagtgcccacagagggagcatttagacaagccctgggccagaggggaatttcccaccccagcagaaggaactctaatcctggccagct
Downstream sequence
atttaccggaaaggaaaaaacttaggagaaaaagattcgaggagagatggactactaagtattcaactgtgggcacgttatgcttcagatacctataagc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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