KCTD8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019598
Fusion event
HBV-KCTD8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1792
Integrated sequence
CGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCAT| |AAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTG
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44210709/44208692 (Hg38)
End
44210709/44208692 (Hg38)
Location type
Intron1
Target gene
KCTD8
Nearest miRNA
hsa-mir-12113/Upstream/3706573; hsa-mir-1243/Downstream/3443977;
Nearest TSS
ENST00000502981/Upstream/191630; ENST00000513775/Downstream/238921;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1551159, chr4-CpG: 174/Downstream/238677
Upstream sequence
ATCTCTACATTTTGCTCATTGCTTCCATACAATTATCGCACTTATAGAGAGCATATTTTTCCTCAAACCGCCAACTTCACAAAACAGCAAATGATTTGTA
Downstream sequence
TGCCCTGCCCTTCAATTCATATGTCCTCATAATACTCAACTGGAATCTCCCCTACCTATAGATACTGTAAATACTAAGTAAAGCAAAGGCTGCATCATTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate