Basic Information
VIS ID
TVIS10019599
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1637
Integrated sequence
TTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAA| |TATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGA
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
4193004/4192891 (Hg38)
End
4193004/4192891 (Hg38)
Nearest miRNA
hsa-mir-4277/Upstream/2484023; hsa-mir-10397/Downstream/2634962;
Nearest TSS
ENST00000502646/Upstream/57209; ENST00000503188/Downstream/247368;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/230493, chr5-CpG: 39/Downstream/673313
Nearby gene
LINC02114
Upstream sequence
GACTAATTGGGGAAAATAGGGGACGGCATTCTTTAACGGAAAAAAAAAAGCATATGGGCAGACACATATGAATTTGGAAGGGAGGATGACATGAAGATAG
Downstream sequence
GCAGTTTATTAGTCTCTCTAACCACCCAAAGTAATCCTCAAGGTTCCTTTTGAGTAAAATTCCCGGCATTGAATGATAGAAAATATTATTAAGCTGCTTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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