VISDB Viral Integration Site DataBase

VIS ID

TVIS10019600

Fusion event

HBV-PPWD1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1275

End

1846

Integrated sequence

CGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCA

Chromosome

chr5

Cytoband

q12.3

Reference genome

Start

End

64878405/65582578 (Hg38)

Location type

Intron7

Target gene

miRNAs that regulate target gene

hsa-mir-361-3p ; hsa-mir-7153-5p ; hsa-mir-7641 ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-4502 ; hsa-mir-4699-3p ; hsa-mir-4773 ; hsa-mir-4662a-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-8066 ; hsa-mir-6768-3p ; hsa-mir-606 ; hsa-mir-340-5p ; hsa-mir-4423-3p ; hsa-mir-4775 ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-32-3p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-6875-3p ; hsa-mir-6883-3p ; hsa-mir-630 ; hsa-mir-4999-5p

Nearest miRNA

hsa-mir-10397/Upstream/5878875; hsa-mir-103a-1/Downstream/6586889;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/19122, chr5-CpG: 30/Downstream/41509

Upstream sequence

AACAATGGTTTGTGAGAAGTCCTTTATGTACTTCCTACCTAGGCTATCGGGAGCCTTTCTACCAGAAACTCAGAACTATTACAGCACTGACTAGTCAGCA

Downstream sequence

atgtactgttatcatcatatatgagtgagggaagagaagaaatgaattcacatccccaaagtcgcagaactggaattcaaatccaaacaatctAAATAAT