Basic Information
VIS ID
TVIS10019601
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
120380672/121044977 (Hg38)
End
120380672/121044977 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/1890261; hsa-mir-103a-1/Downstream/8052711;
Nearest TSS
ENST00000502646/Upstream/263759; ENST00000599562/Downstream/154727;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/580604, chr5-CpG: 71/Downstream/806715
Nearby gene
LOC102467226
Upstream sequence
TTCACATAGGTCTCTATCTTCTGTACACTCTGGTTGAGAAAACTGGAACTACATATAGTTTTGCTTCCAACAGTTGTTTTGACAGAAATTTTCAAAAGCT
Downstream sequence
GAGAATGGAAATTGACTAAAAGGACTTCCATCAATAAAATTAAGTAGGATGTGAAAATATTTAAACAGAATAAACGCCTAAAATAAATTACTATTTTATT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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