Basic Information
VIS ID
TVIS10019603
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132090676/129328397 (Hg38)
End
132090872/129328593 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/935683; hsa-mir-12126/Downstream/541012;
Nearest TSS
ENST00000422679/Upstream/136; ENST00000427109/Downstream/3707;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/7094, chr9-CpG: 45/Downstream/8251
Nearby gene
C9orf106
Upstream sequence
TGCTCTTTAGTGTGAAACCGGTCTGGGTTTCACACTCATGTTCTCTAGATATTAGGCTCTAATTAGTAAGTCTTGTGACACATTTCTGAAAATCAGACAG
Downstream sequence
caggcctggccaggggctcccaggtgagatggaggctgtgccagctgggaccacattctttgtagtaaggGTGTTACGAATTCTTTTCACCCTCAGTGCC
Target sequence
ATTCCTCTGGAGTCCCTCTGAGGAGTGGTCTGTGATGGGACAGGGGCCCTGGAAGGGGAGGGAGGAAGGCAGGTGTGGCCGCCCCTTAGGAGGCAGGCAGAGGGCACCCTGCAACCAGGGTGCATCCAAGCGttccccaaccttaatgtgccttgactcgctgtggggtttcgttcagatgcaggttctgagggag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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