VISDB Viral Integration Site DataBase

VIS ID

TVIS10019604

Fusion event

HBV-ERC1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1451

End

1696

Integrated sequence

GCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACC

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

1568133/1458967 (Hg38)

Location type

Intron15

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-335-5p ; hsa-mir-183-5p ; hsa-mir-26b-5p ; hsa-let-7d-5p ; hsa-mir-320b ; hsa-mir-1229-3p ; hsa-mir-320a ; hsa-mir-221-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-4278 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4487 ; hsa-mir-4445-5p ; hsa-mir-6754-5p ; hsa-mir-342-3p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6760-5p ; hsa-mir-6510-5p ; hsa-mir-6873-5p ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4462 ; hsa-mir-6773-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5190 ; hsa-mir-500b-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1267 ; hsa-mir-203b-3p ; hsa-mir-3183 ; hsa-mir-3612 ; hsa-mir-4723-3p ; hsa-mir-5196-3p ; hsa-mir-650 ; hsa-mir-6769b-3p ; hsa-mir-6787-3p ; hsa-mir-7111-3p ; hsa-mir-7158-3p

Nearest miRNA

hsa-let-7i/Downstream/201348;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/467348, chr12-CpG: 238/Downstream/70900

Upstream sequence

tgggttaggggttagggttagggttggggtagggttagggttagggttagggttagggttaaggttagggttagggttagggttagggttagggttaggg

Downstream sequence

GTGAAAAATCAAGAACCAATATTCACCTATAAAAAATGTTTTATTAgctgagcatagtggtgcatgccaatagtcccagctacctgggaaggctgaggtg