Basic Information
VIS ID
TVIS10019605
Fusion event
HBV-LOC105370265 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1810
Integrated sequence
CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
77289003/76714868 (Hg38)
End
77289003/76714868 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LOC105370265
Nearest miRNA
hsa-mir-1297/Upstream/10496544; hsa-mir-1267/Downstream/983144;
Nearest TSS
ENST00000623511/Upstream/700367; ENST00000646457/Downstream/118971;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1077791, chr13-CpG: 195/Downstream/170319
Nearby gene
KCTD12
Upstream sequence
tctcctgcttcagcctccccagtagctgggattacaggcatgcaccaccacacccagctaattttgtatttttagtagagacactgtttctctgtgttgg
Downstream sequence
cacacacaaacacacacaaaaaaacgggtactgaggtgagctgacgaacatattgattagcttcactgtggtaatcatttcacaatccatacatacatca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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