VISDB Viral Integration Site DataBase

VIS ID

TVIS10019606

Fusion event

HBV-AKAP6 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1388

End

1845

Integrated sequence

TGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGC

Chromosome

chr14

Cytoband

q12

Reference genome

Start

End

33302386/32833180 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1257 ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-7641 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-4755-3p ; hsa-mir-4695-3p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-483-5p

Nearest miRNA

hsa-mir-208a/Upstream/1818438; hsa-mir-1185-1/Downstream/4119129;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/629471, chr14-CpG: 168/Downstream/99708

Nearby gene

Upstream sequence

gtctgaacttaaggtgctggcagggccatggcctctttgaagcctctggggagcatcatttttgcctcttctagctcctggtggctcttgaaagtccttg

Downstream sequence

tcagccattcagcaaacatttattaaatggctacctatgtgaggcactatatttggcattaggtatataaaggcaactaacacatggtatctgtctccaa