Basic Information
VIS ID
TVIS10019607
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1501
End
1638
Integrated sequence
TCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATA
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
85265823/84799479 (Hg38)
End
85265823/84799479 (Hg38)
Nearest miRNA
hsa-mir-1260a/Upstream/7533189; hsa-mir-1185-1/Downstream/9148747;
Nearest TSS
ENST00000550708/Upstream/884429; ENST00000554753/Downstream/439995;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3265389, chr14-CpG: 45/Downstream/730671
Nearby gene
LINC02329
Upstream sequence
CAGTCCAGTGCCTAAGTCATCTGGAATCTTCTCCTTACATCGAATACAAACCTAACCTGTTTCCAAGTAGGGCACTCCCTCCGCTTATTTATTCATTTat
Downstream sequence
TAGATGACAGGTTGTCACATTTTGCAGTCGAACACATGATTTTACAAAATATGTCTTGTCTAGTAAGGTCAACATAGAGCTTGAACAGAAATCAATTATT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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