Basic Information
VIS ID
TVIS10019608
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1775
Integrated sequence
TCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTAC| |TAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCC
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1331055/1281054 (Hg38)
End
1331055/1281054 (Hg38)
Nearest miRNA
hsa-mir-3176/Upstream/510777; hsa-mir-11401/Downstream/453931;
Nearest TSS
ENST00000527434/Upstream/24921; ENST00000562470/Downstream/18112;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19297, chr16-CpG: 167/Downstream/27674
Nearby gene
TPSD1
Upstream sequence
TTATTTTTACCTTAGATATTTTTTCATTTCCTTTTATGCCTACAAATTCCCTCCCAATTTCTACTCCAATCTAGAAACAGGTAAATATTAGATATGATAA
Downstream sequence
CCCAGACCttttttttttttttttttttttgcagcagggtctcgctcttgcccaggctggagtgcagtggcatgatcatagctctctgcagccttgacct
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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