Basic Information
VIS ID
TVIS10019610
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1553
End
1816
Integrated sequence
TCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCAC
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
29725706/28353386 (Hg38)
End
29725706/28353386 (Hg38)
Nearest miRNA
hsa-let-7c/Upstream/1399343; hsa-mir-3197/Downstream/2021908;
Nearest TSS
ENST00000624081/Upstream/124719; ENST00000412526/Downstream/185932;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1209399, chr21-CpG: 29/Downstream/531717
Nearby gene
LINC00161
Upstream sequence
ATATCAAGGATGAATGAGCTCATTAGTTCCACAGTAAGCAATTCTTCTCCCTCAAAGCAtcttattttaaaatactccacatcccttgtaagttggattc
Downstream sequence
ctaggtattttattctctttgaagcaattgtgaatgggaattgactcatgatttggctctctgtttgtctgttgttggtgtgtaagaatgcttgtgattt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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