Basic Information
VIS ID
TVIS10019612
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1548
End
1803
Integrated sequence
CCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
119870592/119327969 (Hg38)
End
119870808/119328185 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/2233241; hsa-mir-1182/Downstream/26522402;
Nearest TSS
ENST00000473358/Upstream/666; ENST00000457683/Downstream/67;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/57, chr1-CpG: 134/Downstream/294494
Nearby gene
HAO2
Upstream sequence
tttcacttagcattatgccctccaggttcatccatgatgttgcaaatggcaggattgctttcttttttatgggtgaataatattccatggtgtatatgta
Downstream sequence
ACTCCAGGTCTTATATCTTGAAACTgtaagtccctgaattcacagacaattcagagtaaggatggaggcaaagaagaggaccttgggtttactgttcacg
Target sequence
CTCAATAGCAAACTCAATGTTCCCAGAGATGAACCAAGTAATCAGTTATTTATTCAGAAAATTAAGTGCCATTCGTGTGCCAGGCACTGCGCCCCCTACCCGCAGGCCTCACCTTGGCCACCGGCCTGAGTTGTTCTCATTTCTCCTCCCTCTACCTCCAGGCTTCTTCCTCGGGGTTAGCAGGGGCCTGGAGTGGATGTTTAGTCTACCGGTCAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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