Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019614
Fusion event
HBV-PIGR integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2446
Integrated sequence
GTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTC| |AATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTC
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
End
207105921/206932576 (Hg38)
Location type
Exon4
Target gene
miRNAs that regulate target gene
hsa-mir-6720-5p ; hsa-mir-7703 ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4793-3p ; hsa-mir-4486 ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-6089 ; hsa-mir-583 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-3937 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-133a-3p ; hsa-mir-4713-5p ; hsa-mir-642a-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4281 ; hsa-mir-7152-3p ; hsa-mir-1236-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1224-3p ; hsa-mir-3620-3p ; hsa-mir-504-5p
Nearest miRNA
hsa-mir-101-1/Upstream/457712; hsa-mir-1182/Downstream/869276;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/22719, chr1-CpG: 38/Downstream/118168
Upstream sequence
CCCCTAGGGAAAACTACAAATGGAAAATTCATTGATTTTTGATTTTGCTTTCCTATGGATTAAATTTAACACTTTCTTGTAAATCTCTCCCTTTACAGAT
Downstream sequence
aaaataccacaaaaactaagattgatgagagggagaactaaaattattaaaattaggaataaaatggggaactaactactgactacaatcatttttaaaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13