Basic Information
VIS ID
TVIS10019615
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1721
Integrated sequence
GTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTT| |TGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
210381570/210208225 (Hg38)
End
210381570/210208225 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/584715; hsa-mir-1182/Downstream/1869388;
Nearest TSS
ENST00000473358/Upstream/187179; ENST00000490620/Downstream/24574;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/269516, chr1-CpG: 134/Downstream/24373
Nearby gene
SERTAD4-AS1
Upstream sequence
TGTATTAGGGCTCCACGCACACAACTGTGCACCATCTATGTTACCACACAGTGCTTACTTCTTTCAGTTTTTATTCATTTCTCTCCTAATGGTCTGTATG
Downstream sequence
GAGCCTCTGTGCTGGCTTTTGTAGTTGGAACTAAAGATAAGTTGATGAGGAAAATGAAGCGCCTGAGATCAAGAGGTGGTAGagagaagtaaataagcat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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