Basic Information
VIS ID
TVIS10019616
Fusion event
HBV-LOC101927711 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
233007477/232871731 (Hg38)
End
233007477/232871731 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC101927711
Nearest miRNA
hsa-mir-101-1/Upstream/1851807; hsa-mir-1537/Downstream/752421;
Nearest TSS
ENST00000473358/Upstream/66839; ENST00000479125/Downstream/78874;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/65770, chr1-CpG: 40/Downstream/78714
Nearby gene
MAP10
Upstream sequence
TTTATACAATAAATGTTAGTTTCCTGTGAACCTGCTAATTAATATGACTTTTGCAGACATTTCCTTAACCTAAACAGTTTGGGTTTCCTGTATATAGACT
Downstream sequence
tgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaaaaaaaaaaaaaaaGgtgccagagatctttgttttctctttaagatc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate