FMN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019617
Fusion event
HBV-FMN2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
240369412/240206112 (Hg38)
End
240369412/240206112 (Hg38)
Location type
Intron4
Target gene
FMN2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-4738-3p ; hsa-mir-374c-3p ; hsa-mir-4282
Nearest miRNA
hsa-mir-101-1/Upstream/2734921; hsa-mir-3123/Downstream/926160;
Nearest TSS
ENST00000473358/Upstream/26468; ENST00000441342/Downstream/29659;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/112349, chr1-CpG: 48/Downstream/1447
Upstream sequence
GATCCTAACCAGTATCATGCACAGAATCCGTTTCCACCTCTTCATATGGAAGCAGCTCTGGGTGGACATCTAGAAAGTTGGATAACTATTTATCACATAT
Downstream sequence
ccgtgcccagccAATACATCATCATTTTCAAAAAGGGGTGGTCATCCTCCAAAATTAAAAAAGCAAGCATATAGTTTAAGTTCAATTATGAAATAATGGC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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