VRK2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019618
Fusion event
HBV-VRK2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1605
End
1809
Integrated sequence
TCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
58385250/58158115 (Hg38)
End
58385250/58158115 (Hg38)
Location type
Intron12
Fragile sites / regions
FRA2S
Target gene
VRK2
Nearest miRNA
hsa-mir-1301/Upstream/2157320; hsa-mir-10b/Downstream/2229247;
Nearest TSS
ENST00000437798/Upstream/111240; ENST00000608934/Downstream/7688;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/110828, chr2-CpG: 50/Downstream/82863
Upstream sequence
TCTGATTTCTGTTCATAGAGAAAACATGTGCAACTATTTAACCAAATTTACTTATTCGTTTAAGATTGtttttgttcctttttttttttcaagacagagt
Downstream sequence
CCTAAGTGGAGATATCTCCCAGCCTTGCACATGTGAGCTATATGTAAATGCTGCTCTATGATTTGATAGCATAATTATTATTTGTATTATGCTTTATAGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate