Basic Information
VIS ID
TVIS10019620
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
82407147/82180023 (Hg38)
End
82407147/82180023 (Hg38)
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2313440; hsa-mir-10b/Downstream/3603577;
Nearest TSS
ENST00000437798/Upstream/174323; ENST00000448431/Downstream/358688;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/712466, chr2-CpG: 27/Downstream/2110567
Nearby gene
DHFRP3
Upstream sequence
attagtacaacctctatggaaatcagtatggagatttctcggagaactgaaaatagaactaccattcaatctagcaataccacaactgggcatctaccca
Downstream sequence
atatatattcagacactggcttgctggatcatagggtatgatagttttatatttttaagtttttaagaaacctcacatatggttttctatagcagctgta
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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