Basic Information
VIS ID
TVIS10019626
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1633
End
1786
Integrated sequence
CAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTA
Host Sequence
Chromosome
chr3
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
106662841/106943994 (Hg38)
End
106662841/106943994 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/3419878; hsa-mir-12124/Downstream/2658834;
Nearest TSS
ENST00000440867/Upstream/1074442; ENST00000473550/Downstream/185997;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1074620, chr3-CpG: 49/Downstream/296568
Nearby gene
LINC00882
Upstream sequence
aaacctaaagaccccaccaaaaaaccactggaactgataaacagtaaaatttcaggatacaaaataacataagaaaatcagtagtatttatacatgccag
Downstream sequence
tcaatctgtcacccaggctggagtgcagtggctcatcatggctcaatgcaggctcaacctcctgggttcaagtaatcctcccacctcagcctcccaagta
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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