Basic Information
VIS ID
TVIS10019627
Fusion event
HBV-LOC105374039 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1548
End
1792
Integrated sequence
CCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATA
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
111199050/111480203 (Hg38)
End
111199050/111480203 (Hg38)
Location type
Intronic
Target gene
LOC105374039
Nearest miRNA
hsa-let-7g/Upstream/1877306; hsa-mir-12124/Downstream/632598;
Nearest TSS
ENST00000440867/Upstream/187484; ENST00000488054/Downstream/16892;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/407649, chr3-CpG: 21/Downstream/194277
Nearby gene
CD96
Upstream sequence
TTGTACTAGATACAGCTCttattaataaataaaaaaattatataGGCCATCTTGTCGCCATGGGACAAATAATTGCTGTGAATTTATATTATCTTCAATA
Downstream sequence
ccttaaactcctgagaatgcagccaagcaggtctcagtcttatttcacccagcccctattcaagatggagttgctctggttcaaatgcctctgacaTAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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