ATP11B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019629
Fusion event
HBV-ATP11B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1707
End
1798
Integrated sequence
CTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGG
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
182599328/182881540 (Hg38)
End
182599328/182881540 (Hg38)
Location type
Intron21
Fragile sites / regions
FRA3C
Target gene
ATP11B
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-652-3p ; hsa-mir-222-3p
Nearest miRNA
hsa-let-7g/Upstream/6366389; hsa-mir-1224/Downstream/1005260;
Nearest TSS
ENST00000440867/Upstream/2001; ENST00000475636/Downstream/15762;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/87046, chr3-CpG: 91/Downstream/98421
Upstream sequence
atacaagggagatttagttacctgtaatgttatattttttgatgcaggtgctattttcatgggtatgctcacttagtacaaagtgtttgagttgaactca
Downstream sequence
aaaaaaaaaaaagaaaCTTCCTATAATTAAGCCCACTATTTAATATATTTTCATTCCAAATTTTAGTTTCAGATTTTAAAGGAAATAAATACCACATTAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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