Basic Information
VIS ID
TVIS10019630
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1738
Integrated sequence
ATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAG| |GAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCT
Host Sequence
Chromosome
chr3
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
184086707/184368919 (Hg38)
End
184086707/184368919 (Hg38)
Fragile sites / regions
FRA3C
Nearest miRNA
hsa-let-7g/Upstream/127430; hsa-mir-1248/Downstream/884291;
Nearest TSS
ENST00000440867/Upstream/2404; ENST00000496527/Downstream/4518;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/5421, chr3-CpG: 104/Downstream/10986
Nearby gene
THPO
Upstream sequence
acacacacacacgtaaaaaacataattttaacagaaagaagtcaaacacaaaaaagtatatgattctattaatataaaattcagaaacaggcaaaactaa
Downstream sequence
TCATTATTTTTATGGAAGCTTTGGGTAGAGGCTTTTAGCTACAGGCATGGGAGATGACTATGAAGAGAGTAGGACGAGAGGACTTGGTGGTTCTGGAAGC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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