Basic Information
VIS ID
TVIS10019632
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1584
End
1769
Integrated sequence
ACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTT
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
15420826/15419202 (Hg38)
End
15420826/15419202 (Hg38)
Location type
Intron
Fragile sites / regions
FRA4D
Target gene
C1QTNF7 ; LOC101929095
Nearest miRNA
hsa-mir-12113/Upstream/1791245; hsa-mir-12115/Downstream/5109073;
Nearest TSS
ENST00000502981/Upstream/44651; ENST00000444304/Downstream/830;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/414065, chr4-CpG: 145/Downstream/235539
Upstream sequence
CTGTGACTGCCACCTGGCAAAGAGAGGTTGTTTGGATTGTCACACTCAGTCTAGGTGCTTGTATTTTTAGACACGTTAGGTTGAGAGTTCTGACCTTCAC
Downstream sequence
tacagaccttttgatccaataattccatttctgggaatctatcctaaggaaataatcctaaatagggataaaggcttatgcacaaaactttcaatgtaat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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