Basic Information
VIS ID
TVIS10019634
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1787
Integrated sequence
ACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTA| |GGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTT
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
GRCh37/hg19
Start
99988320/99067169 (Hg38)
End
99988320/99067169 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/69709; hsa-mir-1243/Downstream/2173626;
Nearest TSS
ENST00000502981/Upstream/21979; ENST00000499178/Downstream/956;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/70751, chr4-CpG: 43/Downstream/21416
Nearby gene
ADH5
Upstream sequence
gccagttttggggccagtttatggccagattttggggggccctgctcccaacatgtcccgcttctctgatttgcaaatcaacaaaagcaaaggcagcttt
Downstream sequence
TTGGGTCAGAGATCACCAGACAATTCCAGATAGAATTTTTTAAACTTAAATCTGAATTTGAGCCCTGGATGATTCTGAGGAAACAATGCCAAGGATAAGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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