Basic Information
VIS ID
TVIS10019635
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1381
End
1749
Integrated sequence
GCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAA
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
GRCh37/hg19
Start
126691149/125769994 (Hg38)
End
126691149/125769994 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/262687; hsa-mir-1305/Downstream/17573466;
Nearest TSS
ENST00000502981/Upstream/93276; ENST00000505741/Downstream/300714;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/452219, chr4-CpG: 86/Downstream/1852882
Nearby gene
MIR2054
Upstream sequence
tttaatcttcctctcttcttgtgaagtctgacttgtctgaaattaatttagctacttcatttttcttttgattagtgttaccatggagtacctttctcca
Downstream sequence
ATAGGTTGCTTGCCAGTACACTGTTGAGTATAAATGCACTCAATTATTCTGGGCCAAGCTGGTGGAAATGTTTTCTGCTAATGGCGCACATGGACACTGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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