Basic Information
VIS ID
TVIS10019636
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1547
End
1752
Integrated sequence
TCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAG
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
44917481/44917379 (Hg38)
End
44917481/44917379 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/6359818; hsa-mir-103a-1/Downstream/9034125;
Nearest TSS
ENST00000502646/Upstream/91303; ENST00000506656/Downstream/117820;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/107789, chr5-CpG: 100/Downstream/777913
Nearby gene
MRPS30
Upstream sequence
TTCCTATTTTAAAGGTCTCTGAATTACCTATAATTTTATAAGTAAGAAATTCTTAGAAAGTAAAATGATTGATAAGATATGTGTATATTCTTTATTTCAG
Downstream sequence
atttaaccattcacccattgagtgacatctgagttcgtactggtttttgactatcacaaataatgccactataaatactcatatacgggtttctctatgg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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