Basic Information
VIS ID
TVIS10019638
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
61085059/61789232 (Hg38)
End
61085059/61789232 (Hg38)
Fragile sites / regions
FRA5H
Nearest miRNA
hsa-mir-10397/Upstream/2085529; hsa-mir-103a-1/Downstream/10380235;
Nearest TSS
ENST00000502646/Upstream/53563; ENST00000511474/Downstream/88877;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/162587, chr5-CpG: 141/Downstream/516558
Nearby gene
C5orf64-AS1
Upstream sequence
taaagcaaaatcatatatcttctgaatttcatttcatacaactagagaataaaagtttgtctaattaaaaataggagctttggccaggggcggtggctca
Downstream sequence
GGCTCAAAGAAGTGGCCCCTGGCTTAGAGTAGGGGGATCTCCAAATTGATGTAGGTCGTATTTCTGGAAACTATGTGAGAAGGCAGATGGCCTTCCAGCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate