Basic Information
VIS ID
TVIS10019639
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1578
End
1702
Integrated sequence
GTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGG
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
101535813/102200109 (Hg38)
End
101535813/102200109 (Hg38)
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/1383544; hsa-mir-103a-1/Downstream/8313720;
Nearest TSS
ENST00000502646/Upstream/56032; ENST00000502494/Downstream/96440;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1296675, chr5-CpG: 26/Downstream/96337
Nearby gene
SLCO4C1
Upstream sequence
TAGAGAATGCTTCCATCATTTGGTTACACCAGTATTCTCAGAGATAATAATTTTATTCTCTACAATTTAGAAGGAGCCCTGCTTTTAAGAAACTGAGTGT
Downstream sequence
ATACCAGCATCATCTGCAGCACATGAAGATTCTTGCTGGGCTAGAGGTCTGTATGAGGCACCCTGGCTCTAGTTCCACCATGTTTCTCTTCCCTGACCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate