Basic Information
VIS ID
TVIS10019640
Fusion event
HBV-LOC105379107 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1759
Integrated sequence
GAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGG| |TTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCC
Host Sequence
Chromosome
chr5
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
103252897/103917196 (Hg38)
End
103252897/103917196 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LOC105379107
Nearest miRNA
hsa-mir-10397/Upstream/3100631; hsa-mir-103a-1/Downstream/6596633;
Nearest TSS
ENST00000502646/Upstream/354403; ENST00000514769/Downstream/162715;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/657347, chr5-CpG: 253/Downstream/3752233
Nearby gene
NUDT12
Upstream sequence
caaccacattcacctctcacccccttttctgtcttgatgccactagcattagtttcattgtggatattaactttgtttatcttagtcatcaaagaagccc
Downstream sequence
GTGTGTTCTTTGCGAAACACAGCTTCCACAATTTGTTTCTGTCTGCCATCTTGTTCAAAACTATATCCCCTCCCCCAAAGAAAAACTATTCTACCTTTAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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