HSD17B4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019641
Fusion event
HBV-HSD17B4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2446
Integrated sequence
GTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTC| |AATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTC
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
118824886/119489191 (Hg38)
End
118824886/119489191 (Hg38)
Location type
Exon8
Target gene
HSD17B4
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-10397/Upstream/334475; hsa-mir-103a-1/Downstream/9608497;
Nearest TSS
ENST00000502646/Upstream/10359; ENST00000512029/Downstream/4627;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/36458, chr5-CpG: 42/Downstream/974935
Upstream sequence
TTCTATAACAAATTAGATTAAAGGATGGTCAAGTCCGAAGACCTAAGAACTCTACCACTCAACACTGAAGAGAAAACAAGGCCATCAAAAATACTCGATA
Downstream sequence
ATCTTGTGGAAGCCCTGAAGCCAGAGTATGTGGCACCTCTTGTCCTTTGGCTTTGTCACGAGAGTTGTGAGGAGAATGGTGGCTTGTTTGAGGTATTTGC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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