Basic Information
VIS ID
TVIS10019642
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1579
End
1813
Integrated sequence
TGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
141185282/141805715 (Hg38)
End
141185282/141805715 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/1157789; hsa-mir-103a-1/Downstream/1874145;
Nearest TSS
ENST00000502646/Upstream/123494; ENST00000506775/Downstream/20610;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/51944, chr5-CpG: 102/Downstream/43650
Nearby gene
PCDH1
Upstream sequence
CTTATTATCAAACTTCTTAGATGCTTTTTTTCACCCTCTTCTAAAAGAAATTAAAATACCCTATTTCCATCTGGATTACAAAAACAAAAATAATGGCCTT
Downstream sequence
GGCAACAACAGGCCTAGTCCTTCCTGATATCTTTGGCTGTACCTGAGTAAAACCCCAGGAAGGGACGCACAGCCTGACTGTGCTGGAAGGAAGGCAGAAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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