Basic Information
VIS ID
TVIS10019643
Fusion event
HBV-LINC01470 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1597
End
1803
Integrated sequence
TCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
152248358/152868798 (Hg38)
End
152248843/152869283 (Hg38)
Location type
Intron3
Target gene
LINC01470
Nearest miRNA
hsa-mir-10397/Upstream/1346650; hsa-mir-103a-1/Downstream/1477823;
Nearest TSS
ENST00000502646/Upstream/179269; ENST00000520353/Downstream/102500;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/943535, chr5-CpG: 50/Downstream/1169340
Upstream sequence
cccatttttatggttatttcttgattatatgtgaaacaagaggtggattattcatgcctcccctttcagaccatatagggtaactttctgacattgccat
Downstream sequence
tgcatttggtgttcaattattttaatatttgaataaagatttcatatagatttgaaaaaaaaatacaaatttagtgaatttacatcaaaaaagctatggc
Target sequence
cacctgtaattccagcactttggggcaccaaggtgagtggatcacctgaggtcagaggtttgagaccaggatggccaacatggtgaaaccccatctctactaaaaaactacaaaattagctggggcatgatggtgcatgcctgtaatcccagctacttgggaggctgaggcagaagaatcgcttgaaccccagaggcacaggtgagtcgaggttgtgccactgcactccagcctgggcgataagagtgagacccc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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