Basic Information
VIS ID
TVIS10019645
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1813
Integrated sequence
AGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCA| |CCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGA
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5831328/5831095 (Hg38)
End
5831328/5831095 (Hg38)
Fragile sites / regions
FRA6B
Nearest miRNA
hsa-mir-3691/Upstream/682773; hsa-mir-10398/Downstream/338209;
Nearest TSS
ENST00000381078/Upstream/135823; ENST00000454882/Downstream/20411;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/569393, chr6-CpG: 29/Downstream/20282
Nearby gene
LOC101927950
Upstream sequence
CGGTTTGACTGATTTCCCTAAATTGTTTTGCTTTTCTCTGCTTTTTCTCCTTCTTTATTTCCGTAACCACAGGTTCTCTAAAACACAGGTGTTTCTCTTT
Downstream sequence
acaaaaccccctctctaccaaaaatataaaaattagccaggcgtggtggcacgtgcctatagtcccagctactcaggaggctgaggcaggagaattgctt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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