Basic Information
VIS ID
TVIS10019646
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1770
Integrated sequence
GACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTT| |TGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAG
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
78283553/77573836 (Hg38)
End
78283553/77573836 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2145363; hsa-mir-10524/Downstream/965427;
Nearest TSS
ENST00000381078/Upstream/110063; ENST00000602452/Downstream/116822;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/109461, chr6-CpG: 36/Downstream/76304
Nearby gene
HTR1B
Upstream sequence
ATGGACACCTTCTCTTGCACAGAAACAGGCCAATCTTGGCTCTGAAATAGTCTATTCAGATACTAGTCTGCCAAAGAAAAACTGCGATCTGACTAGTCAA
Downstream sequence
acgcccttccccATGTCTCGCAGATGTATATCCTCATTAACTTTCCCCTTTTTGATTTGTTTCTGAGCTCTATGAGGAGAGGGCCCCTACCTGCAAGCCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate