Basic Information
VIS ID
TVIS10019647
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1469
End
1759
Integrated sequence
GGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGT
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
88623962/87914244 (Hg38)
End
88623962/87914244 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/9374935; hsa-mir-1202/Downstream/2398498;
Nearest TSS
ENST00000381078/Upstream/212035; ENST00000237201/Downstream/133545;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/211794, chr6-CpG: 76/Downstream/133330
Nearby gene
LOC101928911
Upstream sequence
tcctgcacagcaaaagaaaccatcatcagagtgaacagggaacattcagaatgggagaaaatttttgcaatctatccatctgacaaagggctaataccaa
Downstream sequence
CACTGAACAATCACTTTACAGGATTTCTACCTTATTAAAAATCGAGTATGGCCACCAGGGATTCCAGCGTAAAGGTAATAAAAGAGCACCTAATAAAAAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate