KCND2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019649
Fusion event
HBV-KCND2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1542
End
1836
Integrated sequence
CGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
GRCh37/hg19
Start
120298856/120658802 (Hg38)
End
120298856/120658802 (Hg38)
Location type
Intron1
Target gene
KCND2
Nearest miRNA
hsa-mir-10525/Upstream/3638483; hsa-mir-10399/Downstream/6399286;
Nearest TSS
ENST00000635602/Upstream/385134; ENST00000473190/Downstream/82042;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/383371, chr7-CpG: 83/Downstream/198264
Upstream sequence
aaaataaaaaaaaaGTTAAAGAGCACTACAGATTCAATGATTTATTATTCTTTTCTACAAATTGTGTTTAAATGATATCTCTTTCTCTTTTTGTCCTTAT
Downstream sequence
GTACAATGCATTAATTGAAAATGTACTTCTTCCACACACCCACATTAATTCAACAATTATGAAGCGTGTTAGGCACTGTGGGATTGGTCTATACCGGCAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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