EXOC4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019650
Fusion event
HBV-EXOC4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1663
End
1792
Integrated sequence
ACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATA
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37/hg19
Start
133085754/133401000 (Hg38)
End
133085754/133401000 (Hg38)
Location type
Intron7
Target gene
EXOC4
miRNAs that regulate target gene
hsa-mir-33a-5p ; hsa-mir-877-3p ; hsa-mir-93-3p ; hsa-mir-3200-3p
Nearest miRNA
hsa-mir-10525/Upstream/110012; hsa-mir-10399/Downstream/1805994;
Nearest TSS
ENST00000635602/Upstream/4861; ENST00000494685/Downstream/46300;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/318664, chr7-CpG: 17/Downstream/726252
Upstream sequence
CACAGCGTATTCCAGAACAGGTGAGGATCCCGCCTACCTGATAACATTGCTTATGGTGCAAGATGACTGGACCCCCACAGAGCCTGGTGCAGTGGGGCTA
Downstream sequence
TCTGAGTTGTACAGGAAGTAGTAAAAGTTTTTTAAATGTCCTTCTAGTTCTCTTTTAACCAACTAGAAGAGTTGCCAGGATTTTTAATTTCCACTCTGGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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