Basic Information
VIS ID
TVIS10019651
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1782
Integrated sequence
TGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGG| |CTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGT
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55682832/54770272 (Hg38)
End
55682832/54770272 (Hg38)
Location type
Intronic
Target gene
LOC105375842 ; LOC107984125
Nearest miRNA
hsa-mir-124-1/Upstream/11873997; hsa-mir-10400/Downstream/6944516;
Nearest TSS
ENST00000518652/Upstream/154205; ENST00000522559/Downstream/332117;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/148799, chr8-CpG: 222/Downstream/330824
Nearby gene
RP1
Upstream sequence
CCTAGCAAGGCAGCtgcccagggtcccttagctagcaagccacatatccaatccagaaggtcagactccaaagccaggactctctgccactgcaccTACC
Downstream sequence
TAACTATTGATTGAAAAATACTTAAAATGAACACGGAATAAGCATTATAGTTGATTTATAAAGAAACTAACAGCAACTTTAGCTCCAAATGCTTTTTTCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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