Basic Information
VIS ID
TVIS10019652
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
108079696/107067468 (Hg38)
End
108079696/107067468 (Hg38)
Nearest miRNA
hsa-mir-12123/Upstream/2583003; hsa-mir-10400/Downstream/5576025;
Nearest TSS
ENST00000518652/Upstream/297223; ENST00000520037/Downstream/228073;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/409105, chr8-CpG: 92/Downstream/1015159
Nearby gene
ANGPT1
Upstream sequence
gaggtgggaggatctcttgagcctggggggtttgaggatacagtgagctatgattgtgccactgcactccagtcagggtgacagagtgagattctgtttc
Downstream sequence
GAAAACTAATAAAGAAATATTTCCCAGTATCATTGCATTGTTAGAAAAAAGTTTCCATGTTTATTAACAGTATAAGAAAATTTAAAAGATTGAAGATATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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