KIAA2026 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019653
Fusion event
HBV-KIAA2026 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1806
Integrated sequence
ACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGC| |ACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGG
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
5885181/5885181 (Hg38)
End
5885181/5885181 (Hg38)
Location type
Intronic
Target gene
KIAA2026
miRNAs that regulate target gene
hsa-let-7a-5p ; hsa-mir-8485 ; hsa-mir-323a-3p
Nearest miRNA
hsa-mir-101-2/Upstream/1034806; hsa-let-7a-1/Downstream/122645;
Nearest TSS
ENST00000422679/Upstream/52064; ENST00000490518/Downstream/5621;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/51920, chr9-CpG: 135/Downstream/121783
Nearby gene
MLANA
Upstream sequence
ATTGCTAATTCATAATACAGTTAGAAATGTGTGGAGCTGCAGTGTAATGGTAGAATAACTGGGCTGCCATACTTAGGAACCTCTGGTATATTCAGAGAGA
Downstream sequence
atattgtgatgatcatgtatttttggtttttcttttcttttttttttgagacggagtattgctctgtcacccaggctggagtgcaatggtgcgatcttgg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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