TEX10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019655
Fusion event
HBV-TEX10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1751
Integrated sequence
TTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGG| |AGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGT
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
103074137/100311855 (Hg38)
End
103074137/100311855 (Hg38)
Location type
Intron4
Target gene
TEX10
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-222-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-let-7a-1/Upstream/2082638; hsa-mir-12126/Downstream/6289073;
Nearest TSS
ENST00000422679/Upstream/3986; ENST00000398977/Downstream/35449;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/212460, chr9-CpG: 93/Downstream/40458
Upstream sequence
CCACCATGTGATGCAATGATCATCTTGCTGGATTTCTGTGATGAGAGAGGGATGCTGTGGTATAGAATAAACATGGAAATGGGTCTTGGGAAATTCCTCT
Downstream sequence
CCACTTTCGGATCACTGTCCCAACAGACTTCTGGTTTTGGGACCCAGAGTAGCGGATTCTCTGGTTTTGGATCAGGCACAGGAGGTAAGCTGCCACAAGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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