Basic Information
VIS ID
TVIS10019656
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1805
Integrated sequence
TACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCG| |CACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATG
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
106556370/103794089 (Hg38)
End
106556370/103794089 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/5564872; hsa-mir-12126/Downstream/2806839;
Nearest TSS
ENST00000422679/Upstream/364197; ENST00000647310/Downstream/205666;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2055295, chr9-CpG: 38/Downstream/205260
Nearby gene
LOC101928523
Upstream sequence
ttttgctatttaacaactttgtgaccttgggcagagttacttatctgaatcttttcactcatctgtaaaacaaggatgatgattactaactcataacatc
Downstream sequence
AGGTTCGCTAAGCTCTTGCTCCGCCTGCCGGCTCTGCGCTCCATCGGGCTCAAATGCCTGGAACATCTCTTCTTCTTCAAGCTCATCGGGGACACACCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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