PSMB7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019658
Fusion event
HBV-PSMB7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
127170696/124408417 (Hg38)
End
127170696/124408417 (Hg38)
Location type
Intron4
Target gene
PSMB7
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3194-5p
Nearest miRNA
hsa-let-7a-1/Upstream/922795; hsa-mir-12126/Downstream/284025;
Nearest TSS
ENST00000422679/Upstream/23761; ENST00000618308/Downstream/6874;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/149955, chr9-CpG: 32/Downstream/6670
Upstream sequence
aacaaaagccaaaattgacaaatgggatctaatcaaactaaaaaacttctgcacagcaaaagaaactatcatcagggtgaacaggcaacctacagaatgg
Downstream sequence
agcccctacattcatgaaccttctctagcagtggaagacataaatggtttgcttcaagtaattaattactagagcacagactatagggaagaagtatggg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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