Basic Information
VIS ID
TVIS10019659
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1740
Integrated sequence
TGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGA| |GTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAA
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
1064415/1018475 (Hg38)
End
1064800/1018860 (Hg38)
Nearest miRNA
hsa-mir-5699/Upstream/376697; hsa-mir-107/Downstream/1057159;
Nearest TSS
ENST00000439456/Upstream/6075; ENST00000434470/Downstream/3806;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/29800, chr10-CpG: 123/Downstream/29537
Nearby gene
IDI2
Upstream sequence
ggcatgctggaatcaagatacaaaaaaatttcgacagcttgaaaCAGGGttaagaagggtaaatgtaaaatcctgcacttttctgggggaaagaatgtga
Downstream sequence
CACCAAAACTTAACATATAGTTTACTTTGTGTTAAACAACAACAGTATGTTTTAAAGCAAGTATGTCTTTATTTGTAAGCATATTACTGAAACGATCAAA
Target sequence
AAACACCAAAACTTAACATATAGTTTACTTTGTGTTAAACAACAACAGTATggccgggcgcggcagctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtagtcccaactacttgggaggctgaggcaggagaatggcttgaac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate