GAS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019660
Fusion event
HBV-GAS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1515
End
1738
Integrated sequence
CGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGG
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
22698380/22676834 (Hg38)
End
22698380/22676834 (Hg38)
Location type
Intron2
Target gene
GAS2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-210/Upstream/2916751; hsa-let-7a-2/Downstream/742271;
Nearest TSS
ENST00000527297/Upstream/2061; ENST00000526665/Downstream/78814;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9763, chr11-CpG: 60/Downstream/152385
Upstream sequence
ggagttgtatggtttcaggtcttagatttaagtctcaactcattttgagcaaaaattcttgaagAACTTTTTAACTTTCTTGTGCACACCATCTCAGGCA
Downstream sequence
GCCGGCATAGCTCAGGCAGAGCCTCACGCCTGCCTCTGACACTGTCCTCAAAGCCTCTTTGATTTCCCCCTTGCATTTGATTGGGTAAGACACATTCCTC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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