GDPD4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019661
Fusion event
HBV-GDPD4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1774
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
GRCh37/hg19
Start
76972735/77261690 (Hg38)
End
76972735/77261690 (Hg38)
Location type
Intron7
Target gene
GDPD4
Nearest miRNA
hsa-mir-10392/Upstream/1926504; hsa-let-7a-2/Downstream/2140332;
Nearest TSS
ENST00000527297/Upstream/37388; ENST00000598970/Downstream/25728;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/81750, chr11-CpG: 33/Downstream/150001
Upstream sequence
agtggcgcgatctcggcccactgcaacctctgcctaccaggttcaagtgattctcctgcctcaacctcctgagtagctgggattacaggcgtgcaccacc
Downstream sequence
GTCCGCTGACGTCGCCGCCCAGATGGCCTCCAGGCTGACCCTGCTGACCCTCCTGCTGCTGCTGCTGGCTGGGGTATGTGGTCCCTTGTGGGATGGGGGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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